A python parser for PDB files.

This is an introduction on how to use a python PDB class written at EBGM. This "Yet Another PDB parser" has mostly been developped to make easy the manipulation of sets of PDB data, which we previously performed in C for example.

AnthroTools

Software tools and quantitative methods for anthropological research, data collection, and cultural analysis.

ANU Bioinformatics Software List

ANU Bioinformatics Software List

BiBiServ - Bielefeld University Bioinformatics Server

The BiBiServ Tool section currently offers bioinformatics tools for a large variety of tasks: Genome Comparison, Alignments, Primer Design, RNA Studio, Evolutionary Relationships, Others

Bioconductor

Open source and open development software project for the analysis and comprehension of genomic data in R.

BioCyc Pathway/Genome Database Collection

BioCyc offers integrated genome and metabolic pathway databases for humans, microbes, and model eukaryotes, with extensive bioinformatics tools.

BioTools at UMassMed

Presentation to science librarians about the BioTools site (http://biotools.umassmed.edu/), a resource of tools for bioinformatics for the five schools of the University of Massachusetts System.

CAIC

CAIC

COMPARE 4.5

COMPARE 4.5

Cytoscape

Open source software platform for visualizing complex molecular interaction networks and biological pathways.

Galaxy Project

Open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

GeneNetWorks

Integrated system GeneNetWorks is designed for accumulation of experimental data, data navigation, and modeling.

JCVI Software

TIGR Software Tools developed at J. Craig Venter Institute for genomic and bioinformatics analysis.

MacClade

MacClade

MAXQDA Official Site | All-In-One Tool for Qualitative Data Analysis

MAXQDA is a professional QDA software for mixed methods and qualitative data analysis to easily analyze, code and present your data.

MHC-I Binding

IEDB Analysis Resource

Mick"s Software Links

Mick"s Software Links

MorphoJ

Software for geometric morphometrics used in physical anthropology, paleanthropology, and evolutionary biology.

PAST (Paleontological Statistics)

Past is free software for scientific data analysis, with functions for data manipulation, plotting, univariate and multivariate statistics, ecological analysis, time series and spatial analysis, morphometrics and stratigraphy.

PAST Foundation

PAST Foundation designs transdisciplinary problem-based learning solutions, anthropology tools, and educational frameworks.

Paul Harvey research group at Oxford University

Paul Harvey research group at Oxford University

PDAP

PDAP

PHYLIP

PHYLIP

Phylogenetic Tree Analysis Software

Align sequences, build, and analyze phylogenetic trees using your choice of algorithm.

Phylogeny Programs Listings

Phylogeny Programs Listings

Ribosomal Database Project

Ribosomal Database Project

RQDA

R-based Qualitative Data Analysis software for coding text data in anthropological and ethnographic field research.

Software Listing at Glasgow

Software Listing at Glasgow

UCINET Social Network Analysis

Software for the analysis of social network data, widely applied in cultural anthropology and social anthropology.